Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gene set testing
•
reset
0
votes
0
replies
804
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
4.4 years ago
svlachavas
▴ 840
4
votes
11
replies
2.8k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 5.2 years ago by
Robert Castelo
★ 3.4k • written 5.2 years ago by
Jeremy Beales
▴ 10
2
votes
3
replies
1.6k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma
agilent microarrays
mroast
fry gene tests
gene set testing
updated 6.4 years ago by
Gordon Smyth
52k • written 6.4 years ago by
svlachavas
▴ 840
7
votes
2
replies
1.8k
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
jamie.gearing
▴ 60
1
vote
4
replies
1.5k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
6.5 years ago
Andrea Carenzo
• 0
0
votes
1
reply
1.6k
views
GAGE function and the same.dir option
gage
gene set testing
updated 6.8 years ago by
Luo Weijun
★ 1.6k • written 6.8 years ago by
Aurora
▴ 20
2
votes
4
replies
2.0k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 10 months ago by
Chris
▴ 20 • written 8.2 years ago by
Pekka Kohonen
▴ 190
4
votes
6
replies
2.2k
views
Gene set Testing with Limma for Agilent IDs probes?
limma
agilent microarrays
gene set testing
annotation
8.1 years ago
Bouzid.a
▴ 20
7
votes
13
replies
2.9k
views
Test whether expression levels of two gene sets are significantly different
R
DESeq2
gene set testing
gene expression
8.3 years ago
Jon Bråte
▴ 260
3
votes
4
replies
1.9k
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
le2336
▴ 20
1
vote
0
replies
1.6k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
8.9 years ago
m.fletcher
▴ 20
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
8.9 years ago
claire.n.levy
▴ 10
7
votes
6
replies
3.5k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma
mroast
barcodeplot
KEGG
gene set testing
updated 9.3 years ago by
Gordon Smyth
52k • written 9.3 years ago by
svlachavas
▴ 840
6
votes
10
replies
2.2k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
9.8 years ago
svlachavas
▴ 840
14 results • Page
1 of 1
Recent ...
Replies
Answer: library org.Hs.eg.db failing to install
by
James W. MacDonald
68k
It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
Elijah
• 0
Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…
Answer: Surprising behavior for DEXseq dispersion estimate plot?
by
Michael Love
43k
The red points are just slowly moving toward -Inf. They tend to have variance < mean (if it were a simple design and you could just look at…
Answer: DESeq use in lipidomic analysis
by
Michael Love
43k
I would go for limma rather than a NB-based method. See the papers on limma for metabolomics / proteomics.
Answer: DiffBind - question on the use of filtered or unfiltered input data
by
robert
• 0
[FFH4X][1] Injector is a Free Fire mod menu software that includes a variety of intriguing hack features such as aimbot, auto headshot, fly…
Votes
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Calculating TOM in blockwise WGCNA
A: What is the "linear model" part used for in Limma?
Awards
• All
Popular Question
to
ramiro.barrantes
▴ 10
Popular Question
to
shepherl
4.1k
Teacher
to
Aaron Lun
★ 28k
Popular Question
to
Laurent Gatto
1.6k
Popular Question
to
JKim
• 0
Locations
• All
Mexico,
8 minutes ago
United States,
21 minutes ago
Czechia,
46 minutes ago
United States,
48 minutes ago
United States,
59 minutes ago
Traffic: 636 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6